下面是小编为大家整理的基因大数据智能生产及分析行研报告,供大家参考。
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https://www.broadinstitute.org
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https://www.sanger.ac.uk
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http://www.genomics.cn
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https://usegalaxy.org GenePattern
https://www.genepattern.org
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http://bowtie.cbcb.umd.edu
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http://bio-bwa.sourceforge.net/
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http://soap.genomics.org.cn/soapaligner.html
Maq
http://maq.sourceforge.net/ RMAP
http://rulai.cshl.edu/rmap/
SeqMap
http://www-personal.umich.edu/-jianghui/seqmap SHRiMP
http://compbio.cs.toronto.edu/shrimp SSAHA2
http://www.sanger.ac.uk/resourcds/software/ssaha2/ SNAP
http://snap.cs.berkeley.edu/ Variation
Call
Cortex
http://cortexassembler.sourceforge.ner/ SNVMlx
http://compbio.bccrc.ca/software/snvmix/ ExomeCNV
http://secure.genome.ucla.edu/index.php/ExomeCNV_User_Gui de
GATK
http://www.broadinstitute.org/gatk/ SAMtools
Pileup
http://samtools.sourceforge.net/pi1eup.shtml
STRiP
http://www.boradinstitute.gatk/guide/topic?name=third-party-tools
BreakDancer
http://gmt.genome.wustl.edu/breakdancer/1.2/index.html TIGRA
SV
http://gmt.genome.wustl.edu/tigra
sv/0.1/index.html Annotation
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idb2.R
http://compbio.charite.de/contao/index.php/ibd2.html Genome
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http://gmt.genome.wustl.edu/2.12/04/27/genome_music_0.3_rel
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http://compbio.bccrc.ca/software/mutationseq/ SnpEff
http://snpeff.sourceforge.net/ SomaticSniper
http://gmt.genome.wust1.edu/somatic-sniper/current
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HMMSplicer
http://derisilab.ucsf.edu/index.php?software=105
MapSplice
http://www.nerlab.uky.edu/p/bioinfo/MapSplice
SOAPsplice
http://soap.genomics.org.cn/soapsp1ice.html
SpliceMap
http://www.stanford.edu/group/wong1ab/spliceMap/
Supersplat
http://mockerlab.org/tools/1
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http://tophat.cbcb.umd.edu/ Splice
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http://derisilab.ucsf.edu/index.php?software=105
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http://www.nerlab.uky.edu/p/bioinfo/MapSplice
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http://soap.genomics.org.cn/soapsp1ice.html
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http://www.stanford.edu/group/wonglab/spliceMap/ Supersplat
http://mockerlab.org/tools/1
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http://tophat.cbcb.umd.edu/ Isoform
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http://www.alexaplatform.org/alexa_seq/index.htm
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http://cufflinks.cbcb.umd.edu/
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C1inicaltrials.gov
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